Companion Tools
Companion Tools are complementary applications to FROGS. These tools provide interactive, user-friendly interfaces that extend the capabilities of FROGS, allowing users to go beyond ASV generation and explore results.
Easy16S is designed to facilitate the exploration, visualization, and analysis of microbiome data.
The goal of easy16S is to provide a user-friendly interactive web-application with convenient functions and default settings to explore, visualize and analyze metabarcoding data.
It builds upon the phyloseq package and its extensions and is tightly integrated with the FROGS sequence processing suite.
The documentation: https://easy16s.migale.inrae.fr/
Click on the logo to access the application.
Shiny app for exploration and disambiguation of FROGS multi-affiliation.
The goal of affiliationExplorer is to provide a user-friendly graphical
interface to choose between different conflicting affiliations.
The app will then sort the multi-affiliated taxa from most abundant to
least abundant and help you pick one (or none) of the conflicting
affiliations. You can also edit the affiliation manually.
The documentation: https://forge.inrae.fr/migale/affiliationexplorer
Click on the logo to access the application.
LEAP: Learn and Evaluate Affiliation databanks on an online Platform
A web-based interactive platform using Quarto Dashboards to help users explore and understand the content of each databanks.
The platform provides detailed insights such as:
- marker type, sequence length distributions
- taxonomic composition, proportion of ambiguous or unclassified taxa
- comparative views across different versions or databanks
The documentation:
https://forge.inrae.fr/FROGS/LEAP and
Poster JOBIM 2025
Click on the logo to access the online platform.